Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APL_0163 | dcd | APL_0163 | APL_0835 | Anaerobic ribonucleoside triphosphate reductase. | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | 0.901 |
APL_0163 | dut | APL_0163 | APL_1968 | Anaerobic ribonucleoside triphosphate reductase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase); This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.918 |
APL_0163 | mazG | APL_0163 | APL_0630 | Anaerobic ribonucleoside triphosphate reductase. | Predicted pyrophosphatase. | 0.900 |
APL_0163 | ndk | APL_0163 | APL_0351 | Anaerobic ribonucleoside triphosphate reductase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.910 |
APL_0163 | pyrG | APL_0163 | APL_0136 | Anaerobic ribonucleoside triphosphate reductase. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.906 |
APL_0833 | dcd | APL_0833 | APL_0835 | Hypothetical protein. | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | 0.534 |
APL_0833 | udk | APL_0833 | APL_0834 | Hypothetical protein. | Uridine kinase. | 0.538 |
APL_1978 | dcd | APL_1978 | APL_0835 | Hypothetical protein. | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | 0.469 |
APL_1978 | nrdA | APL_1978 | APL_0992 | Hypothetical protein. | Ribonucleoside-diphosphate reductase alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.496 |
APL_1978 | nrdB | APL_1978 | APL_0993 | Hypothetical protein. | Ribonucleoside-diphosphate reductase subunit beta. | 0.544 |
dcd | APL_0163 | APL_0835 | APL_0163 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Anaerobic ribonucleoside triphosphate reductase. | 0.901 |
dcd | APL_0833 | APL_0835 | APL_0833 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Hypothetical protein. | 0.534 |
dcd | APL_1978 | APL_0835 | APL_1978 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Hypothetical protein. | 0.469 |
dcd | dut | APL_0835 | APL_1968 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase); This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.919 |
dcd | mazG | APL_0835 | APL_0630 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Predicted pyrophosphatase. | 0.911 |
dcd | ndk | APL_0835 | APL_0351 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.917 |
dcd | nrdA | APL_0835 | APL_0992 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Ribonucleoside-diphosphate reductase alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.561 |
dcd | nrdB | APL_0835 | APL_0993 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Ribonucleoside-diphosphate reductase subunit beta. | 0.487 |
dcd | pyrG | APL_0835 | APL_0136 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.915 |
dcd | udk | APL_0835 | APL_0834 | Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP. | Uridine kinase. | 0.790 |
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