STRINGSTRING
rnp4 rnp4 rnp3 rnp3 rnp2 rnp2 Msm_0816 Msm_0816 rps5 rps5 rps4 rps4 rps11 rps11 rpl7ae rpl7ae rnp1 rnp1 Msm_0710 Msm_0710 Msm_0952 Msm_0952
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnp4Ribonuclease P, subunit RPR2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (121 aa)    
Predicted Functional Partners:
rnp3
Ribonuclease P, subunit p30; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
  
 0.998
rnp2
Ribonuclease P, subunit Rpp14; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
  
 0.990
Msm_0816
Predicted nucleic acid-binding protein, PIN domain-like family; COG1439.
  
 
  0.985
rps5
Ribosomal protein S5p, RpsE; With S4 and S12 plays an important role in translational accuracy.
   
 
 0.980
rps4
Ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
 0.980
rps11
Ribosomal protein S11p; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 
 0.977
rpl7ae
Ribosomal protein L7ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.965
rnp1
Ribonuclease P, subunit P29; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family.
  
 
 0.962
Msm_0710
RNA-binding protein, CRS1/YhbY family; COG1534.
 
     0.902
Msm_0952
Serine/threonine protein kinase, RIO1 family; COG1718.
   
 
  0.897
Your Current Organism:
Methanobrevibacter smithii
NCBI taxonomy Id: 420247
Other names: M. smithii ATCC 35061, Methanobrevibacter smithii ATCC 35061, Methanobrevibacter smithii DSM 861, Methanobrevibacter smithii PS, Methanobrevibacter smithii str. ATCC 35061, Methanobrevibacter smithii strain ATCC 35061
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.