STRINGSTRING
AZC_2223 AZC_2223 AZC_1592 AZC_1592 murI murI AZC_4544 AZC_4544 rlpA rlpA rlpA-2 rlpA-2 AZC_3626 AZC_3626 rpsD rpsD dedA dedA dacC dacC AZC_4196 AZC_4196
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Experiments
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[Homology]
Score
AZC_2223Lytic murein transglycosylase. (421 aa)    
Predicted Functional Partners:
AZC_1592
Putative D-alanyl-D-alanine carboxypeptidase precursor; Belongs to the peptidase S11 family.
 
  
 0.619
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.550
AZC_4544
Putative penicillin-binding protein.
   
 
 0.524
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.506
rlpA-2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.506
AZC_3626
Putative N-acetylmuramoyl-L-alanine amidase.
     
 0.442
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.438
dedA
DedA family protein.
  
     0.423
dacC
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.418
AZC_4196
Conserved hypothetical protein; Peptidoglycan-binding LysM.
  
  
 0.417
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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