STRINGSTRING
Dalk_2855 Dalk_2855 Dalk_3857 Dalk_3857 Dalk_3439 Dalk_3439 Dalk_4009 Dalk_4009 Dalk_4010 Dalk_4010 Dalk_3436 Dalk_3436 Dalk_3440 Dalk_3440 Dalk_1066 Dalk_1066 Dalk_1056 Dalk_1056 Dalk_0629 Dalk_0629 Dalk_2856 Dalk_2856
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dalk_2855TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: hch:HCH_06248 glutamate-1-semialdehyde-2,1-aminomutase; IMG reference gene:2503008580; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase. (425 aa)    
Predicted Functional Partners:
Dalk_3857
Catalyzes the formation of porphobilinogen from 5-aminolevulinate; IMG reference gene:2503009601; PFAM: Delta-aminolevulinic acid dehydratase.
 
 
 0.991
Dalk_3439
KEGG: dol:Dole_3238 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; IMG reference gene:2503009171; PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase.
 
 0.987
Dalk_4009
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dol:Dole_3062 uroporphyrin-III C-methyltransferase; IMG reference gene:2503009754; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase.
 
 
 0.960
Dalk_4010
KEGG: gme:Gmet_3234 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; IMG reference gene:2503009755; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase.
  
 0.945
Dalk_3436
TIGRFAM: siroheme synthase; KEGG: dol:Dole_3236 siroheme synthase; IMG reference gene:2503009168; TIGRFAM: siroheme synthase, N-terminal domain.
  
 0.924
Dalk_3440
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: dau:Daud_0641 malonyl CoA-acyl carrier protein transacylase; IMG reference gene:2503009172; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
    
 0.897
Dalk_1066
PFAM: aminotransferase class-III; KEGG: dol:Dole_1132 aminotransferase class-III; IMG reference gene:2503006767; PFAM: Aminotransferase class-III.
  
  
 
0.787
Dalk_1056
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_2590 beta-ketoacyl synthase; IMG reference gene:2503006757; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA.
   
 0.687
Dalk_0629
Aminotransferase class-III; PFAM: acylneuraminate cytidylyltransferase; aminotransferase class-III; KEGG: swo:Swol_0203 aminotransferase, class III pyridoxal-phosphate dependent; IMG reference gene:2503006330; PFAM: Cytidylyltransferase; Aminotransferase class-III.
 
  
 
0.612
Dalk_2856
ATP synthase F0F1 protein AtpI; KEGG: dol:Dole_0628 hypothetical protein; IMG reference gene:2503008581; PFAM: Putative F0F1-ATPase subunit (ATPase_gene1).
  
    0.583
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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