STRINGSTRING
Dalk_3403 Dalk_3403 Dalk_2057 Dalk_2057 Dalk_3639 Dalk_3639 Dalk_3310 Dalk_3310 Dalk_3269 Dalk_3269 Dalk_1969 Dalk_1969 Dalk_0839 Dalk_0839 Dalk_4395 Dalk_4395 Dalk_5096 Dalk_5096 Dalk_1188 Dalk_1188 Dalk_1779 Dalk_1779
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3403PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: dol:Dole_2033 methenyltetrahydrofolate cyclohydrolase; IMG reference gene:2503009135; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain. (302 aa)    
Predicted Functional Partners:
Dalk_2057
KEGG: dol:Dole_1427 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylamine/glycine ligase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylglycinamide synthetase; IMG reference gene:2503007774; PFAM: Phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein.
 
 
 0.998
Dalk_3639
Formyltetrahydrofolate synthetase (Formate-tetrahydrofolate ligase); Catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; IMG reference gene:2503009383; PFAM: Formate--tetrahydrofolate ligase.
 
 
 0.997
Dalk_3310
PFAM: Orn/Lys/Arg decarboxylase major region; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dol:Dole_2082 glycine hydroxymethyltransferase; IMG reference gene:2503009040; PFAM: Serine hydroxymethyltransferase.
  
 0.981
Dalk_3269
PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dol:Dole_1516 phosphoribosylaminoimidazolecarboxamide formyltransferase; IMG reference gene:2503008999; PFAM: AICARFT/IMPCHase bienzyme.
 
 
 0.955
Dalk_1969
TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfu:Sfum_1185 phosphoribosylglycinamide formyltransferase; IMG reference gene:2503007686; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent.
 
 
 0.954
Dalk_0839
KEGG: dol:Dole_1665 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; IMG reference gene:2503006540; PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit.
    0.950
Dalk_4395
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dol:Dole_2744 5-formyltetrahydrofolate cyclo-ligase; IMG reference gene:2503010143; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.
    
 0.939
Dalk_5096
PFAM: MGS domain protein; KEGG: dol:Dole_1515 phosphoribosylaminoimidazolecarboxamide formyltransferase; IMG reference gene:2503010855; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain.
  
 
 0.937
Dalk_1188
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: gur:Gura_2064 adenylosuccinate lyase; IMG reference gene:2503006890; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase.
  
  
 0.916
Dalk_1779
PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_2330 methylenetetrahydrofolate reductase (NAD(P)H); IMG reference gene:2503007490; PFAM: Methylenetetrahydrofolate reductase.
    
 0.902
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.