Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AS9A_0831 | AS9A_2916 | AS9A_0831 | AS9A_2916 | Hypothetical protein. | ATP-dependent DNA ligase. | 0.492 |
AS9A_0831 | AS9A_2917 | AS9A_0831 | AS9A_2917 | Hypothetical protein. | Putative ATP-dependent DNA ligase. | 0.661 |
AS9A_0831 | AS9A_4216 | AS9A_0831 | AS9A_4216 | Hypothetical protein. | DNA polymerase LigD, polymerase domain protein. | 0.410 |
AS9A_1832 | AS9A_2021 | AS9A_1832 | AS9A_2021 | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 5'-3' exonuclease. | 0.510 |
AS9A_1832 | AS9A_2916 | AS9A_1832 | AS9A_2916 | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | ATP-dependent DNA ligase. | 0.431 |
AS9A_1832 | AS9A_2917 | AS9A_1832 | AS9A_2917 | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | Putative ATP-dependent DNA ligase. | 0.605 |
AS9A_1832 | AS9A_4216 | AS9A_1832 | AS9A_4216 | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | DNA polymerase LigD, polymerase domain protein. | 0.448 |
AS9A_1832 | polA | AS9A_1832 | AS9A_1477 | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.859 |
AS9A_2021 | AS9A_1832 | AS9A_2021 | AS9A_1832 | 5'-3' exonuclease. | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.510 |
AS9A_2021 | AS9A_2917 | AS9A_2021 | AS9A_2917 | 5'-3' exonuclease. | Putative ATP-dependent DNA ligase. | 0.724 |
AS9A_2021 | AS9A_4201 | AS9A_2021 | AS9A_4201 | 5'-3' exonuclease. | Transcriptional regulator, MerR family. | 0.928 |
AS9A_2021 | AS9A_4216 | AS9A_2021 | AS9A_4216 | 5'-3' exonuclease. | DNA polymerase LigD, polymerase domain protein. | 0.699 |
AS9A_2021 | dnaN | AS9A_2021 | AS9A_0002 | 5'-3' exonuclease. | DNA polymerase III beta subunit. | 0.926 |
AS9A_2021 | polA | AS9A_2021 | AS9A_1477 | 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.663 |
AS9A_2916 | AS9A_0831 | AS9A_2916 | AS9A_0831 | ATP-dependent DNA ligase. | Hypothetical protein. | 0.492 |
AS9A_2916 | AS9A_1832 | AS9A_2916 | AS9A_1832 | ATP-dependent DNA ligase. | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.431 |
AS9A_2916 | AS9A_2917 | AS9A_2916 | AS9A_2917 | ATP-dependent DNA ligase. | Putative ATP-dependent DNA ligase. | 0.994 |
AS9A_2916 | ku | AS9A_2916 | AS9A_4181 | ATP-dependent DNA ligase. | Putative DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.924 |
AS9A_2917 | AS9A_0831 | AS9A_2917 | AS9A_0831 | Putative ATP-dependent DNA ligase. | Hypothetical protein. | 0.661 |
AS9A_2917 | AS9A_1832 | AS9A_2917 | AS9A_1832 | Putative ATP-dependent DNA ligase. | Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. | 0.605 |
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