STRINGSTRING
cmk cmk rpl34e rpl34e rpl14e rpl14e rpl4 rpl4 rpl5 rpl5 rps4e rps4e rpl24 rpl24 rpl14 rpl14 rpl22 rpl22 ABX01610.1 ABX01610.1 nusA nusA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmkTIGRFAM: cytidylate kinase; KEGG: mvn:Mevan_1499 cytidylate kinase, putative. (178 aa)    
Predicted Functional Partners:
rpl34e
PFAM: Ribosomal protein L34e; KEGG: mvn:Mevan_1500 ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family.
 
    0.996
rpl14e
KOW motif; KEGG: mvn:Mevan_1498 KOW motif; Belongs to the eukaryotic ribosomal protein eL14 family.
 
    0.993
rpl4
Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
  
    0.974
rpl5
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
  
    0.974
rps4e
PFAM: RNA-binding S4 domain protein; Ribosomal protein S4E domain protein; Ribosomal protein S4E, central domain protein; KEGG: mvn:Mevan_0722 ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family.
  
    0.974
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
  
    0.974
rpl14
Ribosomal protein L14b/L23e; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
    0.974
rpl22
Ribosomal protein L22; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
  
    0.974
ABX01610.1
PFAM: DNA-binding TFAR19-related protein; KEGG: mvn:Mevan_1162 DNA-binding TFAR19-related protein; Belongs to the PDCD5 family.
  
    0.969
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
 
    0.969
Your Current Organism:
Methanococcus maripaludis C6
NCBI taxonomy Id: 444158
Other names: M. maripaludis C6, Methanococcus maripaludis str. C6, Methanococcus maripaludis strain C6
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.