STRINGSTRING
Snas_2814 Snas_2814 Snas_2815 Snas_2815 Snas_2802 Snas_2802 Snas_0002 Snas_0002 polA polA ku ku Snas_3173 Snas_3173 Snas_3225 Snas_3225 Snas_4031 Snas_4031 Snas_2241 Snas_2241 Snas_0239 Snas_0239
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Snas_2814PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: ank:AnaeK_0832 DNA ligase D. (358 aa)    
Predicted Functional Partners:
Snas_2815
TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: acp:A2cp1_1020 DNA polymerase LigD, polymerase domain protein.
  
 0.999
Snas_2802
TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: acp:A2cp1_1020 DNA polymerase LigD, polymerase domain protein.
  
 0.998
Snas_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.986
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.965
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.948
Snas_3173
PFAM: 5'-3' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: xau:Xaut_3602 5'-3' exonuclease.
 
 0.875
Snas_3225
Exodeoxyribonuclease III Xth; KEGG: bcj:BCAL0487 endonuclease/exonuclease/phosphatase family protein; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
 
 
 0.874
Snas_4031
PFAM: SMC domain protein; KEGG: rme:Rmet_3664 exonuclease SbcC, putative.
   
 0.829
Snas_2241
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein.
  
 
 0.819
Snas_0239
SMART: helicase c2; DEAD-like helicase; KEGG: mxa:MXAN_6717 putative ATP-dependent helicase.
   
 
 0.815
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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