KSE_10220 protein (Kitasatospora setae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KSE_10220

Putative sialidase; Protein synonym:neuraminidase. (603 aa)

Predicted Functional Partners:

KSE_06230

0.900

KSE_08070

0.900

KSE_67070

0.900

KSE_44560

0.846

dapA4

0.637

BAJ25863.1

0.547

BAJ25867.1

0.547

KSE_28600

0.547

KSE_44230

0.547

BAJ33411.1

0.547

Your Current Organism:

Kitasatospora setae

NCBI taxonomy Id: 452652
Other names: K. setae KM-6054, Kitasatospora setae KM-6054, Kitasatospora setae str. KM-6054, Kitasatospora setae strain KM-6054

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAJ25863.1	KSE_10220	KSE_00100t	KSE_10220	Hypothetical protein.	Putative sialidase; Protein synonym:neuraminidase.	0.547
BAJ25867.1	KSE_10220	KSE_00140t	KSE_10220	Hypothetical protein.	Putative sialidase; Protein synonym:neuraminidase.	0.547
BAJ33411.1	KSE_10220	KSE_76600t	KSE_10220	Hypothetical protein.	Putative sialidase; Protein synonym:neuraminidase.	0.547
KSE_06230	KSE_08070	KSE_06230	KSE_08070	Hypothetical protein.	Putative glycoside hydrolase.	0.917
KSE_06230	KSE_10220	KSE_06230	KSE_10220	Hypothetical protein.	Putative sialidase; Protein synonym:neuraminidase.	0.900
KSE_06230	KSE_44560	KSE_06230	KSE_44560	Hypothetical protein.	Putative beta-galactosidase.	0.935
KSE_06230	KSE_67070	KSE_06230	KSE_67070	Hypothetical protein.	Putative hydrolase.	0.921
KSE_08070	KSE_06230	KSE_08070	KSE_06230	Putative glycoside hydrolase.	Hypothetical protein.	0.917
KSE_08070	KSE_10220	KSE_08070	KSE_10220	Putative glycoside hydrolase.	Putative sialidase; Protein synonym:neuraminidase.	0.900
KSE_08070	KSE_44560	KSE_08070	KSE_44560	Putative glycoside hydrolase.	Putative beta-galactosidase.	0.957
KSE_08070	KSE_67070	KSE_08070	KSE_67070	Putative glycoside hydrolase.	Putative hydrolase.	0.917
KSE_10220	BAJ25863.1	KSE_10220	KSE_00100t	Putative sialidase; Protein synonym:neuraminidase.	Hypothetical protein.	0.547
KSE_10220	BAJ25867.1	KSE_10220	KSE_00140t	Putative sialidase; Protein synonym:neuraminidase.	Hypothetical protein.	0.547
KSE_10220	BAJ33411.1	KSE_10220	KSE_76600t	Putative sialidase; Protein synonym:neuraminidase.	Hypothetical protein.	0.547
KSE_10220	KSE_06230	KSE_10220	KSE_06230	Putative sialidase; Protein synonym:neuraminidase.	Hypothetical protein.	0.900
KSE_10220	KSE_08070	KSE_10220	KSE_08070	Putative sialidase; Protein synonym:neuraminidase.	Putative glycoside hydrolase.	0.900
KSE_10220	KSE_28600	KSE_10220	KSE_28600	Putative sialidase; Protein synonym:neuraminidase.	Hypothetical protein; Similar to SdrA in Streptomyces coelicolor (Q9S3Y6).	0.547
KSE_10220	KSE_44230	KSE_10220	KSE_44230	Putative sialidase; Protein synonym:neuraminidase.	Putative ATP-dependent DNA helicase.	0.547
KSE_10220	KSE_44560	KSE_10220	KSE_44560	Putative sialidase; Protein synonym:neuraminidase.	Putative beta-galactosidase.	0.846
KSE_10220	KSE_67070	KSE_10220	KSE_67070	Putative sialidase; Protein synonym:neuraminidase.	Putative hydrolase.	0.900