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Mnod_6498 Mnod_6498 Mnod_1945 Mnod_1945 polA polA Mnod_5851 Mnod_5851 Mnod_7219 Mnod_7219 Mnod_5358 Mnod_5358 rplF rplF Mnod_7150 Mnod_7150 cobB-2 cobB-2 Mnod_6499 Mnod_6499 Mnod_7211 Mnod_7211
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_6498PFAM: Animal haem peroxidase; KEGG: met:M446_5884 hypothetical protein. (969 aa)    
Predicted Functional Partners:
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
 
 0.894
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.833
Mnod_5851
TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; transferase hexapeptide repeat containing protein; KEGG: met:M446_5328 amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.742
Mnod_7219
PFAM: TROVE domain protein; KEGG: mrd:Mrad2831_1806 TROVE domain-containing protein.
  
     0.720
Mnod_5358
PFAM: glycosyl transferase family 28; KEGG: met:M446_5051 hypothetical protein.
 
 
 0.641
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.635
Mnod_7150
PFAM: amidinotransferase; KEGG: met:M446_6335 non-specific serine/threonine protein kinase.
  
   0.613
cobB-2
PFAM: Silent information regulator protein Sir2; KEGG: met:M446_5854 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
 
  0.604
Mnod_6499
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_4; KEGG: met:M446_5885 adenylate/guanylate cyclase.
     
 0.575
Mnod_7211
KEGG: met:M446_6289 hypothetical protein.
    
 0.554
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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