Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tbis_0177 | Tbis_1934 | Tbis_0177 | Tbis_1934 | Hypothetical protein. | Hypothetical protein. | 0.519 |
Tbis_0177 | Tbis_1935 | Tbis_0177 | Tbis_1935 | Hypothetical protein. | Hypothetical protein. | 0.419 |
Tbis_0177 | Tbis_3394 | Tbis_0177 | Tbis_3394 | Hypothetical protein. | Hypothetical protein. | 0.753 |
Tbis_0177 | mshB | Tbis_0177 | Tbis_3036 | Hypothetical protein. | 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway. | 0.675 |
Tbis_0177 | mshD | Tbis_0177 | Tbis_0451 | Hypothetical protein. | Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. | 0.685 |
Tbis_1934 | Tbis_0177 | Tbis_1934 | Tbis_0177 | Hypothetical protein. | Hypothetical protein. | 0.519 |
Tbis_1934 | Tbis_1935 | Tbis_1934 | Tbis_1935 | Hypothetical protein. | Hypothetical protein. | 0.959 |
Tbis_1934 | Tbis_1936 | Tbis_1934 | Tbis_1936 | Hypothetical protein. | PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_0238 phosphoglycerate mutase. | 0.953 |
Tbis_1934 | Tbis_3394 | Tbis_1934 | Tbis_3394 | Hypothetical protein. | Hypothetical protein. | 0.523 |
Tbis_1934 | mshB | Tbis_1934 | Tbis_3036 | Hypothetical protein. | 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway. | 0.741 |
Tbis_1934 | mshC | Tbis_1934 | Tbis_1932 | Hypothetical protein. | cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily. | 0.722 |
Tbis_1934 | mshD | Tbis_1934 | Tbis_0451 | Hypothetical protein. | Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. | 0.550 |
Tbis_1935 | Tbis_0177 | Tbis_1935 | Tbis_0177 | Hypothetical protein. | Hypothetical protein. | 0.419 |
Tbis_1935 | Tbis_1934 | Tbis_1935 | Tbis_1934 | Hypothetical protein. | Hypothetical protein. | 0.959 |
Tbis_1935 | Tbis_1936 | Tbis_1935 | Tbis_1936 | Hypothetical protein. | PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_0238 phosphoglycerate mutase. | 0.950 |
Tbis_1935 | Tbis_3394 | Tbis_1935 | Tbis_3394 | Hypothetical protein. | Hypothetical protein. | 0.519 |
Tbis_1935 | mshA | Tbis_1935 | Tbis_0494 | Hypothetical protein. | UDP-N-acetylglucosamine; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. | 0.407 |
Tbis_1935 | mshB | Tbis_1935 | Tbis_3036 | Hypothetical protein. | 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway. | 0.652 |
Tbis_1935 | mshC | Tbis_1935 | Tbis_1932 | Hypothetical protein. | cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily. | 0.702 |
Tbis_1935 | mshD | Tbis_1935 | Tbis_0451 | Hypothetical protein. | Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. | 0.530 |
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