STRINGSTRING
Minf_0008 Minf_0008 Minf_0007 Minf_0007 Minf_0009 Minf_0009 ugd ugd purA purA Minf_2021 Minf_2021 Minf_0305 Minf_0305 ligT ligT Minf_0012 Minf_0012 uppS uppS Minf_0523 Minf_0523
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Minf_0008ATP-dependent DNA ligase. (366 aa)    
Predicted Functional Partners:
Minf_0007
Predicted DNA-binding protein containing PIN domain; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.797
Minf_0009
Hypothetical protein.
       0.513
ugd
UDP-glucose 6-dehydrogenase.
       0.513
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.500
Minf_2021
UspA family protein.
  
     0.496
Minf_0305
SHS2 domain protein implicated in nucleic acid metabolism.
  
   
 0.449
ligT
2'-5' RNA ligase.
  
     0.441
Minf_0012
Hypothetical protein.
       0.440
uppS
Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.440
Minf_0523
Radical SAM superfamily enzyme.
  
     0.440
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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