STRINGSTRING
ybaN ybaN yncE yncE ydiE ydiE exbB exbB yqjH yqjH ybiX ybiX fhuC fhuC exbD exbD yojI yojI yddB yddB yddA yddA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaNDUF454 family inner membrane protein. (125 aa)    
Predicted Functional Partners:
yncE
ATP-binding protein, periplasmic, function unknown; Putative receptor.
   
  
 0.815
ydiE
Hemin uptake protein HemP homolog; To Y.enterocolitica HemP.
   
  
 0.802
exbB
Membrane spanning protein in TonB-ExbB-ExbD complex; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB.
   
    0.745
yqjH
Putative siderophore interacting protein; Plays a role in iron homeostasis under excess nickel conditions; Belongs to the SIP oxidoreductase family.
  
  
 0.742
ybiX
Fe(II)-dependent oxygenase superfamily protein; Putative enzyme.
   
  
 0.649
fhuC
Iron(3+)-hydroxamate import ABC transporter ATPase; Part of the ABC transporter complex FhuCDB involved in iron(3+)-hydroxamate import. Responsible for energy coupling to the transport system.
  
    0.639
exbD
Membrane spanning protein in TonB-ExbB-ExbD complex; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
  
    0.632
yojI
Microcin J25 efflux ABC transporter permease/ATPase; Mediates resistance to the antibacterial peptide microcin J25, when expressed from a multicopy vector. Functions as an efflux pump for microcin J25, with the help of the outer membrane channel TolC.
   
  
 0.624
yddB
Putative TonB-dependent outer membrane receptor; To H.influenzae HI_1369.
  
  
 0.602
yddA
Putative multidrug ABC transporter permease/ATPase.
      
 0.600
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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