STRINGSTRING
ydfR ydfR rrrQ rrrQ essQ essQ quuQ quuQ flxA flxA yfdT yfdT insL1-2 insL1-2 yfdR yfdR yfdS yfdS ybbC ybbC gnsA gnsA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfRQin prophage; uncharacterized protein. (103 aa)    
Predicted Functional Partners:
rrrQ
Qin prophage; Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity; Belongs to the glycosyl hydrolase 24 family.
  
    0.925
essQ
Qin prophage; putative S lysis protein; Belongs to the lambda phage S protein family.
  
    0.853
quuQ
Qin prophage; Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes (By similarity).
   
  
 0.811
flxA
Qin prophage; uncharacterized protein.
      
 0.787
yfdT
CPS-53 (KpLE1) prophage; uncharacterized protein.
   
  
 0.740
insL1-2
IS186 transposase.
      
 0.739
yfdR
CPS-53 (KpLE1) prophage; conserved protein.
   
  
 0.733
yfdS
CPS-53 (KpLE1) prophage; uncharacterized protein; To the N-terminal region of phage HK97/HK620 Gp37/hpaH.
   
  
 0.690
ybbC
Putative immunity protein.
   
  
 0.627
gnsA
Putative phosphatidylethanolamine synthesis regulator; Overexpression increases levels of unsaturated fatty acids and suppresses both the temperature-sensitive fabA6 mutation and cold- sensitive secG null mutation; Belongs to the gns family.
      
 0.622
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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