Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
insE1-5 | insF1-5 | b2088 | b2089 | Pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted. | IS3 transposase B. | 0.833 |
insF1-2 | insF1-3 | b0372 | b0541 | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | IS3 transposase B. | 0.773 |
insF1-2 | insF1-4 | b0372 | b1026 | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | IS3 transposase B. | 0.790 |
insF1-2 | insF1-5 | b0372 | b2089 | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | IS3 transposase B. | 0.747 |
insF1-2 | sspA | b0372 | b3229 | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | Stringent starvation protein A; Forms an equimolar complex with the RNA polymerase holoenzyme (RNAP) but not with the core enzyme. It is synthesized predominantly when cells are exposed to amino acid starvation, at which time it accounts for over 50% of the total protein synthesized. It is involved in the transition from P1 early to P1 late gene expression. Rnk and SspA can functionally replace P.aeruginosa alginate regulatory gene algR2. | 0.452 |
insF1-2 | yhhY | b0372 | b3441 | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | Aminoacyl nucleotide detoxifying acetyltransferase; Catalyzes the N-acetylation of L-phenylalanine and L- methionine using acetyl-CoA as acetyl donor in vitro. Cannot accept L- tyrosine as substrate and propionyl-CoA, succinyl-CoA or (S)- methylmalonyl-CoA as acyl donors. Is also able to acetylate and thus detoxify several nonhydrolyzable aminoacyl adenylates, but not the processed form of the peptide-nucleotide antibiotic microcin C (McC). When overproduced, provides complete resistance to leucyl sulfamoyl adenylate (LSA) and partial resistance to alanyl sulfamoyl adenylate (ASA) and [...] | 0.506 |
insF1-2 | yqiB | b0372 | b3033 | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | DUF1249 protein YqiB; Putative enzyme. | 0.643 |
insF1-3 | insF1-2 | b0541 | b0372 | IS3 transposase B. | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | 0.773 |
insF1-3 | insF1-4 | b0541 | b1026 | IS3 transposase B. | IS3 transposase B. | 0.989 |
insF1-3 | insF1-5 | b0541 | b2089 | IS3 transposase B. | IS3 transposase B. | 0.960 |
insF1-3 | mdtB | b0541 | b2075 | IS3 transposase B. | Multidrug efflux system, subunit B; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate. MdtABC requires TolC for its function. | 0.459 |
insF1-3 | proB | b0541 | b0242 | IS3 transposase B. | Gamma-glutamate kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.480 |
insF1-3 | sspA | b0541 | b3229 | IS3 transposase B. | Stringent starvation protein A; Forms an equimolar complex with the RNA polymerase holoenzyme (RNAP) but not with the core enzyme. It is synthesized predominantly when cells are exposed to amino acid starvation, at which time it accounts for over 50% of the total protein synthesized. It is involved in the transition from P1 early to P1 late gene expression. Rnk and SspA can functionally replace P.aeruginosa alginate regulatory gene algR2. | 0.509 |
insF1-3 | stpA | b0541 | b2669 | IS3 transposase B. | DNA binding protein, nucleoid-associated; A DNA-binding protein that acts in a fashion similar to H-NS protein upon overexpression, represses a number of genes including the cryptic blg operon, hns, papB and the proU locus. A subset of H-NS/StpA-regulated genes also require Hha for repression; Hha and Cnu (YdgT) increases the number of genes DNA bound by H-NS/StpA and may also modulate the oligomerization of the H-NS/StpA-complex. Repression can be inhibited by dominant-negative mutants of StpA or H-NS. | 0.451 |
insF1-3 | yhhY | b0541 | b3441 | IS3 transposase B. | Aminoacyl nucleotide detoxifying acetyltransferase; Catalyzes the N-acetylation of L-phenylalanine and L- methionine using acetyl-CoA as acetyl donor in vitro. Cannot accept L- tyrosine as substrate and propionyl-CoA, succinyl-CoA or (S)- methylmalonyl-CoA as acyl donors. Is also able to acetylate and thus detoxify several nonhydrolyzable aminoacyl adenylates, but not the processed form of the peptide-nucleotide antibiotic microcin C (McC). When overproduced, provides complete resistance to leucyl sulfamoyl adenylate (LSA) and partial resistance to alanyl sulfamoyl adenylate (ASA) and [...] | 0.529 |
insF1-3 | yqiB | b0541 | b3033 | IS3 transposase B. | DUF1249 protein YqiB; Putative enzyme. | 0.731 |
insF1-4 | insF1-2 | b1026 | b0372 | IS3 transposase B. | Pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein. | 0.790 |
insF1-4 | insF1-3 | b1026 | b0541 | IS3 transposase B. | IS3 transposase B. | 0.989 |
insF1-4 | insF1-5 | b1026 | b2089 | IS3 transposase B. | IS3 transposase B. | 0.957 |
insF1-4 | mdtB | b1026 | b2075 | IS3 transposase B. | Multidrug efflux system, subunit B; The MdtABC tripartite complex confers resistance against novobiocin and deoxycholate. MdtABC requires TolC for its function. | 0.454 |
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