STRINGSTRING
yfjS yfjS ypjK ypjK yfjT yfjT yfjR yfjR nlpE nlpE yfjQ yfjQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
yfjSCP4-57 prophage; Does not induce degP when overexpressed unless it is mutated to resemble YafY. (147 aa)    
Predicted Functional Partners:
ypjK
CP4-57 prophage; putative inner membrane protein; To E.coli YkfL.
       0.779
yfjT
CP4-57 prophage; putative periplasmic protein; To E.coli YkfB.
  
    0.771
yfjR
CP4-57 prophage; putative DNA-binding transcriptional regulator.
  
    0.750
nlpE
Lipoprotein involved with copper homeostasis and adhesion; Involved in copper homeostasis, could be involved in both copper efflux and the delivery of copper to copper-dependent enzymes. Required for efficient binding of stationary phase cells to hydrophobic surfaces, part of the process of biofilm formation. Functions during envelope stress responses; when overproduced induces degP through the activation of the two-component envelope stress response system CpxA/CpxR. DegP induction seems to require membrane anchoring of this protein. Structural changes and/or interaction of the CXXC m [...]
      
 0.543
yfjQ
CP4-57 prophage; uncharacterized protein; Belongs to the UPF0380 family.
  
    0.444
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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