Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
bglJ | sfsB | b4366 | b3188 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | 0.462 |
bglJ | yecT | b4366 | b1877 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Uncharacterized protein; To R.meliloti R02472. | 0.401 |
bglJ | ygiZ | b4366 | b3027 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Inner membrane protein. | 0.812 |
bglJ | ynbA | b4366 | b1408 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Inner membrane protein. | 0.563 |
bglJ | ynjI | b4366 | b1762 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Inner membrane protein. | 0.529 |
bglJ | yqhG | b4366 | b3013 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | DUF3828 family putative periplasmic protein. | 0.519 |
sfsB | bglJ | b3188 | b4366 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | 0.462 |
sfsB | yecT | b3188 | b1877 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Uncharacterized protein; To R.meliloti R02472. | 0.650 |
sfsB | ygiZ | b3188 | b3027 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Inner membrane protein. | 0.531 |
sfsB | yidL | b3188 | b3680 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Putative ARAC-type regulatory protein; Protein involved in transcription activator activity and transcription. | 0.556 |
sfsB | ynbA | b3188 | b1408 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Inner membrane protein. | 0.674 |
sfsB | ynjI | b3188 | b1762 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Inner membrane protein. | 0.780 |
sfsB | yqhG | b3188 | b3013 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | DUF3828 family putative periplasmic protein. | 0.514 |
sfsB | yqhH | b3188 | b3014 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Outer membrane lipoprotein, Lpp paralog. | 0.684 |
yeaR | yqhG | b1797 | b3013 | DUF1971 family protein, nitrate-inducible; Protein involved in xenobiotic metabolic process. | DUF3828 family putative periplasmic protein. | 0.473 |
yecT | bglJ | b1877 | b4366 | Uncharacterized protein; To R.meliloti R02472. | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | 0.401 |
yecT | sfsB | b1877 | b3188 | Uncharacterized protein; To R.meliloti R02472. | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | 0.650 |
yecT | ygiZ | b1877 | b3027 | Uncharacterized protein; To R.meliloti R02472. | Inner membrane protein. | 0.672 |
yecT | yidL | b1877 | b3680 | Uncharacterized protein; To R.meliloti R02472. | Putative ARAC-type regulatory protein; Protein involved in transcription activator activity and transcription. | 0.717 |
yecT | ynbA | b1877 | b1408 | Uncharacterized protein; To R.meliloti R02472. | Inner membrane protein. | 0.744 |
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