STRINGSTRING
ytfK ytfK rsd rsd ytfJ ytfJ yaeH yaeH yodC yodC ybjM ybjM waaH waaH yaiA yaiA yjfN yjfN yjbJ yjbJ yiaG yiaG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytfKDUF1107 family protein. (68 aa)    
Predicted Functional Partners:
rsd
Stationary phase protein, binds sigma 70 RNA polymerase subunit; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. Belongs to the Rsd/AlgQ family.
   
  
 0.787
ytfJ
Putative transcriptional regulator.
  
  
 0.646
yaeH
UPF0325 family protein; Putative structural protein; Belongs to the UPF0325 family.
   
  
 0.560
yodC
Uncharacterized protein.
   
  
 0.539
ybjM
Inner membrane protein.
      
 0.530
waaH
LPS(HepIII)-glucuronic acid glycosyltransferase; Putative regulator; Belongs to the glycosyltransferase 2 family.
      
 0.530
yaiA
OxyR-regulated conserved protein.
   
  
 0.518
yjfN
DUF1471 family periplasmic protein.
   
  
 0.517
yjbJ
Stress-induced protein, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
   
  
 0.492
yiaG
HTH_CROC1 family putative transcriptional regulator; Protein involved in regulation of transcription, DNA-dependent.
   
  
 0.487
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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