Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ibsA | ibsB | b4667 | b4668 | Toxic membrane protein. | Toxic membrane protein. | 0.938 |
ibsA | ibsC | b4667 | b4665 | Toxic membrane protein. | Toxic membrane protein. | 0.808 |
ibsA | ibsD | b4667 | b4664 | Toxic membrane protein. | Toxic membrane protein. | 0.893 |
ibsA | ibsE | b4667 | b4666 | Toxic membrane protein. | Toxic membrane protein. | 0.896 |
ibsA | ogt | b4667 | b1335 | Toxic membrane protein. | O-6-alkylguanine-DNA:cysteine-protein methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.509 |
ibsA | shoB | b4667 | b4687 | Toxic membrane protein. | Toxic membrane protein; Toxic component of a type I toxin-antitoxin (TA) system. May be a toxic protein; overexpression causes cessation of growth and rapid membrane depolarization. Overexpression induces stress-response and a number of membrane protein genes. | 0.455 |
ibsA | tisB | b4667 | b4618 | Toxic membrane protein. | Toxic membrane persister formation peptide, LexA-regulated; Toxic component of a type I toxin-antitoxin (TA) system (Probable). Overexpression causes cessation of growth, induces stress-response, a number of membrane protein genes, and leads to cell death. Inhibits ATP synthesis, ATP levels drop drastically quickly after induction. Part of the programmed response to DNA damage; damage leads to increased accumulation of the protein which slows or stops bacterial growth, probably allowing DNA repair before cells continue to grow. | 0.453 |
ibsA | yegL | b4667 | b2073 | Toxic membrane protein. | VMA domain protein. | 0.568 |
ibsA | yfhL | b4667 | b2562 | Toxic membrane protein. | Putative 4Fe-4S cluster-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.529 |
ibsA | yoaJ | b4667 | b4675 | Toxic membrane protein. | Inner membrane-associated protein. | 0.530 |
ibsB | ibsA | b4668 | b4667 | Toxic membrane protein. | Toxic membrane protein. | 0.938 |
ibsB | ibsC | b4668 | b4665 | Toxic membrane protein. | Toxic membrane protein. | 0.808 |
ibsB | ibsD | b4668 | b4664 | Toxic membrane protein. | Toxic membrane protein. | 0.897 |
ibsB | ibsE | b4668 | b4666 | Toxic membrane protein. | Toxic membrane protein. | 0.891 |
ibsB | yegL | b4668 | b2073 | Toxic membrane protein. | VMA domain protein. | 0.482 |
ibsC | ibsA | b4665 | b4667 | Toxic membrane protein. | Toxic membrane protein. | 0.808 |
ibsC | ibsB | b4665 | b4668 | Toxic membrane protein. | Toxic membrane protein. | 0.808 |
ibsC | ibsD | b4665 | b4664 | Toxic membrane protein. | Toxic membrane protein. | 0.809 |
ibsC | ibsE | b4665 | b4666 | Toxic membrane protein. | Toxic membrane protein. | 0.816 |
ibsC | shoB | b4665 | b4687 | Toxic membrane protein. | Toxic membrane protein; Toxic component of a type I toxin-antitoxin (TA) system. May be a toxic protein; overexpression causes cessation of growth and rapid membrane depolarization. Overexpression induces stress-response and a number of membrane protein genes. | 0.891 |
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