node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Kkor_1854 | rplC | Kkor_1854 | Kkor_0437 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.726 |
Kkor_1854 | rplD | Kkor_1854 | Kkor_0438 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.738 |
Kkor_1854 | rplF | Kkor_1854 | Kkor_0452 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.792 |
Kkor_1854 | rplM | Kkor_1854 | Kkor_0665 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.724 |
Kkor_1854 | rplR | Kkor_1854 | Kkor_0453 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.715 |
Kkor_1854 | rplT | Kkor_1854 | Kkor_1712 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.717 |
Kkor_1854 | rplU | Kkor_1854 | Kkor_1674 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.732 |
Kkor_1854 | rpsC | Kkor_1854 | Kkor_0443 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.723 |
Kkor_1854 | rpsG | Kkor_1854 | Kkor_0433 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.716 |
Kkor_1854 | rpsO | Kkor_1854 | Kkor_0309 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.724 |
rplC | Kkor_1854 | Kkor_0437 | Kkor_1854 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_0690 ABC transporter related. | 0.726 |
rplC | rplD | Kkor_0437 | Kkor_0438 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplF | Kkor_0437 | Kkor_0452 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
rplC | rplM | Kkor_0437 | Kkor_0665 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplC | rplR | Kkor_0437 | Kkor_0453 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplC | rplT | Kkor_0437 | Kkor_1712 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
rplC | rplU | Kkor_0437 | Kkor_1674 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
rplC | rpsC | Kkor_0437 | Kkor_0443 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplC | rpsG | Kkor_0437 | Kkor_0433 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.995 |
rplC | rpsO | Kkor_0437 | Kkor_0309 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.994 |