STRINGSTRING
ribL ribL ADG13677.1 ADG13677.1 ADG12721.1 ADG12721.1 mfnA mfnA ADG12724.1 ADG12724.1 pdxT pdxT ADG12726.1 ADG12726.1 ADG12727.1 ADG12727.1 ADG12720.1 ADG12720.1 ADG13845.1 ADG13845.1 ADG13124.1 ADG13124.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ribLCytidyltransferase-related domain protein; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. (145 aa)    
Predicted Functional Partners:
ADG13677.1
PFAM: protein of unknown function DUF120; KEGG: mja:MJ0056 riboflavin kinase.
     
 0.989
ADG12721.1
PFAM: protein of unknown function UPF0118; KEGG: mvu:Metvu_0384 protein of unknown function UPF0118.
       0.870
mfnA
Pyridoxal-dependent decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily.
     
 0.816
ADG12724.1
PFAM: ATP dependent DNA ligase; KEGG: mfe:Mefer_1305 ATP dependent DNA ligase.
       0.782
pdxT
SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
       0.773
ADG12726.1
Nitrogenase; KEGG: mmp:MMP0147 nitrogenase reductase-like protein; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.
       0.773
ADG12727.1
PFAM: protein of unknown function DUF34; KEGG: mja:MJ0927 hypothetical protein.
       0.773
ADG12720.1
PFAM: glycosyl transferase group 1; KEGG: mfe:Mefer_0149 glycosyl transferase group 1.
  
  
 0.751
ADG13845.1
PFAM: Translin; KEGG: mfe:Mefer_0741 translin.
      
 0.697
ADG13124.1
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tsi:TSIB_1010 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.690
Your Current Organism:
Methanocaldococcus infernus
NCBI taxonomy Id: 573063
Other names: M. infernus ME, Methanocaldococcus infernus DSM 11812, Methanocaldococcus infernus ME, Methanocaldococcus infernus str. ME, Methanocaldococcus infernus strain ME
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