DMR_29360 protein (Desulfovibrio magneticus RS1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DMR_29360

Aldehyde ferredoxin oxidoreductase family protein. (662 aa)

Predicted Functional Partners:

ttuD

0.900

DMR_22820

0.860

moeA

0.786

DMR_12510

0.753

DMR_43860

0.750

DMR_12520

0.731

DMR_29700

0.722

hmeA

0.662

DMR_08240

0.662

DMR_12840

0.662

Your Current Organism:

Desulfovibrio magneticus RS1

NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMR_08240	DMR_29360	DMR_08240	DMR_29360	Iron-sulfur binding protein.	Aldehyde ferredoxin oxidoreductase family protein.	0.662
DMR_12510	DMR_12520	DMR_12510	DMR_12520	Putative ABC transporter substrate binding protein precursor.	ABC transporter permease protein.	0.984
DMR_12510	DMR_22820	DMR_12510	DMR_22820	Putative ABC transporter substrate binding protein precursor.	Iron-sulfur binding protein.	0.563
DMR_12510	DMR_29360	DMR_12510	DMR_29360	Putative ABC transporter substrate binding protein precursor.	Aldehyde ferredoxin oxidoreductase family protein.	0.753
DMR_12510	DMR_43860	DMR_12510	DMR_43860	Putative ABC transporter substrate binding protein precursor.	Putative ABC transporter substrate binding protein precursor.	0.916
DMR_12510	moeA	DMR_12510	DMR_10970	Putative ABC transporter substrate binding protein precursor.	Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	0.766
DMR_12520	DMR_12510	DMR_12520	DMR_12510	ABC transporter permease protein.	Putative ABC transporter substrate binding protein precursor.	0.984
DMR_12520	DMR_22820	DMR_12520	DMR_22820	ABC transporter permease protein.	Iron-sulfur binding protein.	0.432
DMR_12520	DMR_29360	DMR_12520	DMR_29360	ABC transporter permease protein.	Aldehyde ferredoxin oxidoreductase family protein.	0.731
DMR_12520	DMR_43860	DMR_12520	DMR_43860	ABC transporter permease protein.	Putative ABC transporter substrate binding protein precursor.	0.964
DMR_12520	moeA	DMR_12520	DMR_10970	ABC transporter permease protein.	Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	0.808
DMR_12840	DMR_29360	DMR_12840	DMR_29360	HMC operon ORF 2 protein.	Aldehyde ferredoxin oxidoreductase family protein.	0.662
DMR_22820	DMR_12510	DMR_22820	DMR_12510	Iron-sulfur binding protein.	Putative ABC transporter substrate binding protein precursor.	0.563
DMR_22820	DMR_12520	DMR_22820	DMR_12520	Iron-sulfur binding protein.	ABC transporter permease protein.	0.432
DMR_22820	DMR_29360	DMR_22820	DMR_29360	Iron-sulfur binding protein.	Aldehyde ferredoxin oxidoreductase family protein.	0.860
DMR_22820	DMR_29700	DMR_22820	DMR_29700	Iron-sulfur binding protein.	Iron-sulfur binding protein.	0.688
DMR_22820	DMR_43860	DMR_22820	DMR_43860	Iron-sulfur binding protein.	Putative ABC transporter substrate binding protein precursor.	0.585
DMR_22820	hmeA	DMR_22820	DMR_03690	Iron-sulfur binding protein.	Hme subunit A.	0.557
DMR_22820	moeA	DMR_22820	DMR_10970	Iron-sulfur binding protein.	Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	0.463
DMR_29360	DMR_08240	DMR_29360	DMR_08240	Aldehyde ferredoxin oxidoreductase family protein.	Iron-sulfur binding protein.	0.662

page 1 of 3

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About