STRINGSTRING
trmB trmB ABM79169.1 ABM79169.1 ABM79171.1 ABM79171.1 ABM79172.1 ABM79172.1 ABM79167.1 ABM79167.1 truB truB trmA trmA ABM79165.1 ABM79165.1 ABM79166.1 ABM79166.1 ychF ychF sun sun
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
trmBPredicted SAM-dependent methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (236 aa)    
Predicted Functional Partners:
ABM79169.1
COG4398 Uncharacterized protein conserved in bacteria [Function unknown].
       0.784
ABM79171.1
Possible bicarbonate transporter, ICT family protein; COG3307 Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].
       0.773
ABM79172.1
COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].
       0.773
ABM79167.1
Conserved hypothetical protein.
 
     0.707
truB
Putative tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
 
 0.614
trmA
Related to tRNA (uracil-5-)-methyltransferase; COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
  
 0.512
ABM79165.1
Conserved hypothetical protein.
       0.492
ABM79166.1
Conserved hypothetical protein.
       0.492
ychF
Probable GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
 
    0.465
sun
Sun protein (Fmu protein); Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
   
 
 0.449
Your Current Organism:
Prochlorococcus marinus MIT9303
NCBI taxonomy Id: 59922
Other names: P. marinus str. MIT 9303, Prochlorococcus marinus str. MIT 9303, Prochlorococcus sp. MIT 9303, Prochlorococcus sp. MIT9303
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