STRINGSTRING
SLG_10370 SLG_10370 dnaN dnaN SLG_10390 SLG_10390 treZ treZ polA polA ku ku glgX-2 glgX-2 SLG_10380 SLG_10380 SLG_10420 SLG_10420 SLG_11080 SLG_11080 SLG_09600 SLG_09600
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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SLG_10370Putative DNA ligase. (345 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.842
SLG_10390
Maltooligosyl trehalose synthase.
 
    0.839
treZ
Malto-oligosyltrehalose trehalohydrolase.
 
    0.822
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.820
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.816
glgX-2
Glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family.
  
    0.781
SLG_10380
Hypothetical protein.
       0.773
SLG_10420
Putative glucose-1-phosphate adenylyltransferase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
       0.664
SLG_11080
Putative exonuclease.
 
 0.648
SLG_09600
Putative topoisomerase.
 
 
 
 0.565
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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