Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SLG_11060 | SLG_11080 | SLG_11060 | SLG_11080 | Putative two-component system hybrid sensor and regulator. | Putative exonuclease. | 0.613 |
SLG_11060 | cheR-2 | SLG_11060 | SLG_11050 | Putative two-component system hybrid sensor and regulator. | Chemotaxis protein methyltransferase; This ORF product lacks a binding site (Asn residue) required for S-adenosyl-L-methionine binding. | 0.965 |
SLG_11060 | dnaN | SLG_11060 | SLG_33570 | Putative two-component system hybrid sensor and regulator. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.414 |
SLG_11060 | lig | SLG_11060 | SLG_11070 | Putative two-component system hybrid sensor and regulator. | DNA ligase. | 0.589 |
SLG_11060 | polA | SLG_11060 | SLG_03690 | Putative two-component system hybrid sensor and regulator. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.738 |
SLG_11080 | SLG_11060 | SLG_11080 | SLG_11060 | Putative exonuclease. | Putative two-component system hybrid sensor and regulator. | 0.613 |
SLG_11080 | SLG_37720 | SLG_11080 | SLG_37720 | Putative exonuclease. | Hypothetical protein. | 0.783 |
SLG_11080 | SLG_37750 | SLG_11080 | SLG_37750 | Putative exonuclease. | Lhr-like helicase. | 0.815 |
SLG_11080 | cheR-2 | SLG_11080 | SLG_11050 | Putative exonuclease. | Chemotaxis protein methyltransferase; This ORF product lacks a binding site (Asn residue) required for S-adenosyl-L-methionine binding. | 0.598 |
SLG_11080 | lig | SLG_11080 | SLG_11070 | Putative exonuclease. | DNA ligase. | 0.994 |
SLG_11080 | polA | SLG_11080 | SLG_03690 | Putative exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.710 |
SLG_37720 | SLG_11080 | SLG_37720 | SLG_11080 | Hypothetical protein. | Putative exonuclease. | 0.783 |
SLG_37720 | SLG_37750 | SLG_37720 | SLG_37750 | Hypothetical protein. | Lhr-like helicase. | 0.831 |
SLG_37720 | lig | SLG_37720 | SLG_11070 | Hypothetical protein. | DNA ligase. | 0.804 |
SLG_37750 | SLG_11080 | SLG_37750 | SLG_11080 | Lhr-like helicase. | Putative exonuclease. | 0.815 |
SLG_37750 | SLG_37720 | SLG_37750 | SLG_37720 | Lhr-like helicase. | Hypothetical protein. | 0.831 |
SLG_37750 | lig | SLG_37750 | SLG_11070 | Lhr-like helicase. | DNA ligase. | 0.793 |
cheR-2 | SLG_11060 | SLG_11050 | SLG_11060 | Chemotaxis protein methyltransferase; This ORF product lacks a binding site (Asn residue) required for S-adenosyl-L-methionine binding. | Putative two-component system hybrid sensor and regulator. | 0.965 |
cheR-2 | SLG_11080 | SLG_11050 | SLG_11080 | Chemotaxis protein methyltransferase; This ORF product lacks a binding site (Asn residue) required for S-adenosyl-L-methionine binding. | Putative exonuclease. | 0.598 |
cheR-2 | lig | SLG_11050 | SLG_11070 | Chemotaxis protein methyltransferase; This ORF product lacks a binding site (Asn residue) required for S-adenosyl-L-methionine binding. | DNA ligase. | 0.585 |
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