STRINGSTRING
TK2051 TK2051 TK2052 TK2052 TK2097 TK2097 TK2098 TK2098 TK1232 TK1232 tfe tfe TK1335 TK1335 TK0481 TK0481 TK0945 TK0945 TK0142 TK0142 TK1718 TK1718
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK2051Hypothetical protein, conserved. (216 aa)    
Predicted Functional Partners:
TK2052
Predicted transcription regulator, Lrp/AsnC family.
 
     0.787
TK2097
RNA-binding protein, containing THUMP domain.
  
     0.553
TK2098
Predicted ATPase, AAA superfamily.
  
     0.552
TK1232
Hypothetical protein, conserved, DUF354 family.
  
     0.530
tfe
Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...]
  
     0.521
TK1335
Hypothetical protein, conserved, DUF54 family; Belongs to the UPF0201 family.
 
     0.469
TK0481
RNA-binding protein, containing KH domain.
  
     0.467
TK0945
Nucleotidyltransferase.
  
   
 0.465
TK0142
Predicted transcription regulator, containing cell wall binding repeat 2 and DNA-binding HTH domains.
  
   
 0.462
TK1718
Oligosaccharyl transferase, STT3 subunit.
  
     0.443
Your Current Organism:
Thermococcus kodakarensis
NCBI taxonomy Id: 69014
Other names: Pyrococcus sp. (strain KOD1), Pyrococcus sp. KOD1, T. kodakarensis KOD1, Thermococcus kodakaraensis KOD1, Thermococcus kodakarensis KOD1, Thermococcus kodakarensis str. KOD1, Thermococcus kodakarensis strain KOD1
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