STRINGSTRING
SBI_08909 SBI_08909 ligC ligC ku ku SBI_06361 SBI_06361 ligB ligB SBI_00937 SBI_00937 SBI_02133 SBI_02133 SBI_08501 SBI_08501 mutM1 mutM1 lhr lhr
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
SBI_08909Hypothetical protein; COG3285 Predicted eukaryotic-type DNA primase. (334 aa)    
Predicted Functional Partners:
ligC
COG1793 ATP-dependent DNA ligase.
   
 0.995
ku
Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.925
SBI_06361
COG1793 ATP-dependent DNA ligase.
   
 0.866
ligB
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
   
 0.850
SBI_00937
PHP domain protein; COG1796 DNA polymerase IV (family X).
 
   
 0.558
SBI_02133
Hypothetical protein.
 
    0.470
SBI_08501
COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
  
   
 0.468
mutM1
COG0266 Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
 
   
 0.458
lhr
Putative ATP-dependent DNA helicase; COG1201 Lhr-like helicases.
  
     0.406
Your Current Organism:
Streptomyces bingchenggensis
NCBI taxonomy Id: 749414
Other names: S. bingchenggensis BCW-1, Streptomyces bingchenggensis BCW-1, Streptomyces bingchenggensis str. BCW-1, Streptomyces bingchenggensis strain BCW-1
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