STRINGSTRING
hox5 hox5 pbx pbx LOC100182939 LOC100182939 hox4 hox4 Ci-Hox2 Ci-Hox2 otx2 otx2 hox3 hox3 lhx3 lhx3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hox5Hox 5. (220 aa)    
Predicted Functional Partners:
pbx
Homeobox domain-containing protein.
    
 0.886
LOC100182939
Homeobox domain-containing protein.
  
 
0.837
hox4
Transcription factor protein.
  
 
0.710
Ci-Hox2
Transcription factor protein.
  
 
0.475
otx2
Transcription factor protein.
      
 0.429
hox3
Homeoprotein 3 isoform X1.
   
  
0.422
lhx3
LIM/homeobox protein Lhx3a type 1 isoform X1.
    
 
 0.404
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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