pou-iv protein (Ciona intestinalis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

pou-iv

POU domain protein. (412 aa)

Predicted Functional Partners:

err

0.560

F6QMU4_CIOIN

0.534

F6YWM5_CIOIN

0.531

vglut

0.520

msxb

0.517

LOC100181294

0.512

F6SGF7_CIOIN

0.506

F6XAB9_CIOIN

0.506

Foxc

0.476

SoxB1

0.474

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QMU4_CIOIN	LOC100181294	ENSCINP00000009765	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.476
F6QMU4_CIOIN	pou-iv	ENSCINP00000009765	ENSCINP00000010141	Uncharacterized protein.	POU domain protein.	0.534
F6SGF7_CIOIN	pou-iv	ENSCINP00000024400	ENSCINP00000010141	Uncharacterized protein.	POU domain protein.	0.506
F6XAB9_CIOIN	pou-iv	ENSCINP00000025882	ENSCINP00000010141	Homeobox domain-containing protein.	POU domain protein.	0.506
F6YWM5_CIOIN	pou-iv	ENSCINP00000024568	ENSCINP00000010141	BHLH domain-containing protein.	POU domain protein.	0.531
Foxc	SoxB1	ENSCINP00000030676	ENSCINP00000012400	Fork-head domain-containing protein.	HMG box domain-containing protein.	0.455
Foxc	msxb	ENSCINP00000030676	ENSCINP00000018527	Fork-head domain-containing protein.	Homeobox domain-containing protein.	0.439
Foxc	pou-iv	ENSCINP00000030676	ENSCINP00000010141	Fork-head domain-containing protein.	POU domain protein.	0.476
LOC100181294	F6QMU4_CIOIN	ENSCINP00000005526	ENSCINP00000009765	Uncharacterized protein.	Uncharacterized protein.	0.476
LOC100181294	pou-iv	ENSCINP00000005526	ENSCINP00000010141	Uncharacterized protein.	POU domain protein.	0.512
SoxB1	Foxc	ENSCINP00000012400	ENSCINP00000030676	HMG box domain-containing protein.	Fork-head domain-containing protein.	0.455
SoxB1	err	ENSCINP00000012400	ENSCINP00000035869	HMG box domain-containing protein.	Uncharacterized protein.	0.544
SoxB1	pou-iv	ENSCINP00000012400	ENSCINP00000010141	HMG box domain-containing protein.	POU domain protein.	0.474
err	SoxB1	ENSCINP00000035869	ENSCINP00000012400	Uncharacterized protein.	HMG box domain-containing protein.	0.544
err	pou-iv	ENSCINP00000035869	ENSCINP00000010141	Uncharacterized protein.	POU domain protein.	0.560
msxb	Foxc	ENSCINP00000018527	ENSCINP00000030676	Homeobox domain-containing protein.	Fork-head domain-containing protein.	0.439
msxb	pou-iv	ENSCINP00000018527	ENSCINP00000010141	Homeobox domain-containing protein.	POU domain protein.	0.517
pou-iv	F6QMU4_CIOIN	ENSCINP00000010141	ENSCINP00000009765	POU domain protein.	Uncharacterized protein.	0.534
pou-iv	F6SGF7_CIOIN	ENSCINP00000010141	ENSCINP00000024400	POU domain protein.	Uncharacterized protein.	0.506
pou-iv	F6XAB9_CIOIN	ENSCINP00000010141	ENSCINP00000025882	POU domain protein.	Homeobox domain-containing protein.	0.506