STRINGSTRING
pvalb3 pvalb3 eevs eevs clstn1 clstn1 LOC100334297 LOC100334297 slc17a8 slc17a8 otofa otofa papss1 papss1 wdr90 wdr90 atp1a1a.5 atp1a1a.5 tmc2b tmc2b myo6b myo6b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pvalb3Parvalbumin isoform 1b; Belongs to the parvalbumin family. (109 aa)    
Predicted Functional Partners:
eevs
2-epi-5-epi-valiolone synthase.
   
  
 0.595
clstn1
Calsyntenin 1.
   
  
 0.563
LOC100334297
Hyperpolarization-activated cyclic nucleotide-gated potassium channel 1.
   
  
 0.559
slc17a8
Vesicular glutamate transporter 3; Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells; Belongs to the major facilitator superfamily. Sodium/anion cotransporter family. VGLUT subfamily.
    
 
 0.552
otofa
Otoferlin; Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses.
   
  
 0.546
papss1
3'-phosphoadenosine 5'-phosphosulfate synthase 1.
      
 0.542
wdr90
WD repeat domain 90.
    
 
 0.541
atp1a1a.5
Sodium/potassium-transporting ATPase subunit alpha.
   
 
 0.531
tmc2b
Transmembrane channel-like protein 2-B; Belongs to the TMC family.
    
 
 0.521
myo6b
Myosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.521
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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