STRINGSTRING
colgalt1-2 colgalt1-2 plod3 plod3 plod1a plod1a plod2 plod2 mast3a mast3a trim45 trim45 tnpo2 tnpo2 TNPO2 TNPO2 kcnn1b kcnn1b soul5 soul5 serbp1a serbp1a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
colgalt1-2Procollagen galactosyltransferase 1; Beta-galactosyltransferase that transfers beta-galactose to hydroxylysine residues of type I collagen. By acting on collagen glycosylation, facilitates the formation of collagen triple helix. (604 aa)    
Predicted Functional Partners:
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.944
plod1a
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.942
plod2
Procollagen lysine 2-oxoglutarate 5-dioxygenase 2b isoform.
   
0.940
mast3a
Microtubule-associated serine/threonine kinase 3a.
      
 0.724
trim45
Tripartite motif-containing 45.
      
 0.693
tnpo2
Transportin 2 (Importin 3, Karyopherin beta 2b).
      
 0.667
TNPO2
Transportin 2.
      
 0.667
kcnn1b
Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1b.
      
 0.661
soul5
Heme-binding protein soul5.
      
 0.647
serbp1a
SERPINE1 mRNA-binding protein 1a.
      
 0.628
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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