STRINGSTRING
LOC100301625 LOC100301625 samd7 samd7 foxl1 foxl1 LOC111947353 LOC111947353 LOC101175353 LOC101175353 nfia nfia LOC101158988 LOC101158988 thrb thrb LOC101169220 LOC101169220 tmtops2 tmtops2 tmtops1b tmtops1b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100301625Forkhead box Q2. (281 aa)    
Predicted Functional Partners:
samd7
Sterile alpha motif domain containing 7.
   
 0.519
foxl1
Forkhead box L1.
  
0.499
LOC111947353
Zinc finger and BTB domain containing 7a.
    
 0.499
LOC101175353
SIX homeobox 7.
      
 0.471
nfia
Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.
    
 
 0.460
LOC101158988
E2F transcription factor 7.
   
  
 0.455
thrb
Thyroid hormone receptor beta.
    
 0.452
LOC101169220
Si:busm1-57f23.1.
    
 0.450
tmtops2
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.450
tmtops1b
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
      
 0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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