STRINGSTRING
mesp mesp TBX6 TBX6 LOC100820722 LOC100820722 LOC101161725 LOC101161725 tcf12 tcf12 TCF4 TCF4 tcf3 tcf3 RNF220 RNF220 nkx2-5 nkx2-5 LOC101162780 LOC101162780 ldb2 ldb2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mespMesoderm posterior aa. (245 aa)    
Predicted Functional Partners:
TBX6
T-box transcription factor 6.
   
 0.501
LOC100820722
Transcription factor 3b.
   
 0.470
LOC101161725
BHLH domain-containing protein.
   
 0.470
tcf12
Transcription factor 12.
   
 0.470
TCF4
Transcription factor 4.
   
 0.470
tcf3
E2A2 transcription factor.
   
 0.470
RNF220
Uncharacterized protein.
   
 
 0.455
nkx2-5
Homeobox domain-containing protein.
    
 
 0.443
LOC101162780
LIM domain binding 1a.
    
 0.434
ldb2
LIM domain binding 2a.
    
 0.434
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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