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ABK46856.1 ABK46856.1 rpoD rpoD rpoB rpoB rpoC rpoC rpoA rpoA rpoZ rpoZ ABK46630.1 ABK46630.1 ABK47689.1 ABK47689.1 ABK49778.1 ABK49778.1 cpdA cpdA ABK49270.1 ABK49270.1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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ABK46856.1Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: son:SO0624 catabolite gene activator. (211 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.859
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.843
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.839
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.836
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.824
ABK46630.1
PFAM: adenylate cyclase, class-I; KEGG: son:SO4312 adenylate cyclase CyaA, putative; Belongs to the adenylyl cyclase class-1 family.
  
   
 0.688
ABK47689.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: son:SO3094 TPR domain protein.
   
 
 0.681
ABK49778.1
PFAM: von Willebrand factor, type A; KEGG: vfi:VF1421 transporter.
   
 
 0.681
cpdA
Calcineurin phosphoesterase C-terminal domain protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
  
   
 0.658
ABK49270.1
KEGG: son:SO1329 adenylate cyclase-related protein.
   
 0.649
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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