J9P6X5_CANLF protein (Canis lupus familiaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J9P6X5_CANLF

Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (384 aa)

Predicted Functional Partners:

RPS5

0.996

RPS18

0.996

F1PS88_CANLF

0.991

RPS15

0.991

RPS23

0.991

ENSCAFP00000043750

0.991

FAU

0.985

ENSCAFP00000054759

0.985

ENSCAFP00000061156

0.984

RPL8

0.983

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAFP00000043750	ENSCAFP00000054759	ENSCAFP00000043750	ENSCAFP00000054759	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
ENSCAFP00000043750	ENSCAFP00000061156	ENSCAFP00000043750	ENSCAFP00000061156	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
ENSCAFP00000043750	F1PS88_CANLF	ENSCAFP00000043750	ENSCAFP00000015630	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.992
ENSCAFP00000043750	FAU	ENSCAFP00000043750	ENSCAFP00000033982	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.997
ENSCAFP00000043750	J9P6X5_CANLF	ENSCAFP00000043750	ENSCAFP00000041408	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.991
ENSCAFP00000043750	RPL8	ENSCAFP00000043750	ENSCAFP00000002440	Uncharacterized protein.	Ribosomal protein L8.	0.998
ENSCAFP00000043750	RPS18	ENSCAFP00000043750	ENSCAFP00000061231	Uncharacterized protein.	40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA; Belongs to the universal ribosomal protein uS13 family.	0.997
ENSCAFP00000043750	RPS23	ENSCAFP00000043750	ENSCAFP00000038847	Uncharacterized protein.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.992
ENSCAFP00000043750	RPS5	ENSCAFP00000043750	ENSCAFP00000003434	Uncharacterized protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.998
ENSCAFP00000054759	ENSCAFP00000043750	ENSCAFP00000054759	ENSCAFP00000043750	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.997
ENSCAFP00000054759	ENSCAFP00000061156	ENSCAFP00000054759	ENSCAFP00000061156	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.913
ENSCAFP00000054759	F1PS88_CANLF	ENSCAFP00000054759	ENSCAFP00000015630	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.997
ENSCAFP00000054759	FAU	ENSCAFP00000054759	ENSCAFP00000033982	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.912
ENSCAFP00000054759	J9P6X5_CANLF	ENSCAFP00000054759	ENSCAFP00000041408	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.985
ENSCAFP00000054759	RPL8	ENSCAFP00000054759	ENSCAFP00000002440	Ubiquitin-like domain-containing protein.	Ribosomal protein L8.	0.997
ENSCAFP00000054759	RPS15	ENSCAFP00000054759	ENSCAFP00000030914	Ubiquitin-like domain-containing protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.997
ENSCAFP00000054759	RPS18	ENSCAFP00000054759	ENSCAFP00000061231	Ubiquitin-like domain-containing protein.	40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA; Belongs to the universal ribosomal protein uS13 family.	0.999
ENSCAFP00000054759	RPS23	ENSCAFP00000054759	ENSCAFP00000038847	Ubiquitin-like domain-containing protein.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.997
ENSCAFP00000054759	RPS5	ENSCAFP00000054759	ENSCAFP00000003434	Ubiquitin-like domain-containing protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.995
ENSCAFP00000061156	ENSCAFP00000043750	ENSCAFP00000061156	ENSCAFP00000043750	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.997