STRINGSTRING
F751_0090 F751_0090 F751_0688 F751_0688 F751_4150 F751_4150 F751_5569 F751_5569 F751_6001 F751_6001 F751_6623 F751_6623 F751_2094 F751_2094 F751_1973 F751_1973 F751_0593 F751_0593 F751_5020 F751_5020 F751_6257 F751_6257
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F751_0090G patch domain-containing protein 8. (271 aa)    
Predicted Functional Partners:
F751_0688
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.860
F751_4150
Pre-mRNA-processing factor 17.
   
 0.751
F751_5569
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.708
F751_6001
Crooked neck-like protein 1.
   
   0.692
F751_6623
Pre-mRNA-processing-splicing factor 8.
    
 
 0.669
F751_2094
U2 small nuclear ribonucleoprotein A.
    
 
 0.664
F751_1973
Pre-mRNA-splicing factor SYF1.
   
 
 0.653
F751_0593
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.628
F751_5020
Small nuclear ribonucleoprotein-associated protein B.
    
   0.612
F751_6257
SNW domain-containing protein 1.
    
 
 0.607
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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