version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
aroA
3-phosphoshikimate 1-carboxyvinyltransferase (434 aa)
(Burkholderia cenocepacia 2424)
Predicted Functional Partners:
Bcen2424_0392
Shikimate kinase (184 aa)
    0.998
aroC
Chorismate synthase (366 aa)
   0.996
Bcen2424_1044
Prephenate dehydrogenase (329 aa)
     0.995
cmk
Cytidylate kinase (228 aa)
      0.991
Bcen2424_0393
3-dehydroquinate synthase (359 aa)
   0.989
Bcen2424_5303
Shikimate dehydrogenase substrate binding, N-terminal domain protein (284 aa)
     0.975
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvat [...] (360 aa)
     0.966
Bcen2424_5896
shikimate 5-dehydrogenase (278 aa)
    0.936
Bcen2424_1043
Prephenate dehydratase / chorismate mutase (360 aa)
      0.923
Bcen2424_1047
SSU ribosomal protein S1P (576 aa)
      0.913
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth