version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, recA interacts with lexA causing an autocatalytic cleavage which disrupts the DNA-binding part of lexA, leading to derepression of the SOS regulon and eventually DNA repair (By similarity) (275 aa)
(Acidothermus cellulolyticus)
Predicted Functional Partners:
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the AT [...] (345 aa)
    0.976
Acel_0995
DNA polymerase III, alpha subunit (1090 aa)
      0.751
Acel_1444
DNA-directed DNA polymerase (466 aa)
      0.750
Acel_1910
MazG family protein (229 aa)
      0.648
Acel_1106
UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of D [...] (705 aa)
      0.646
gltX
Glutamyl-tRNA synthetase (504 aa)
       0.642
gcp
Probable O-sialoglycoprotein endopeptidase (343 aa)
       0.642
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dep [...] (303 aa)
       0.622
Acel_1598
Ribose 5-phosphate isomerase (160 aa)
       0.618
Acel_0175
Methionyl-tRNA synthetase (539 aa)
       0.613
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth