version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (By similarity) (266 aa)
(Arthrobacter aurescens)
Predicted Functional Partners:
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface a [...] (125 aa)
• ••  • 0.987
rimM
Ribosome maturation factor rimM; An accessory protein needed during the final step in the assem [...] (213 aa)
•       0.972
rpsP
Ribosomal protein S16 (191 aa)
•       0.938
AAur_2451
Putative uncharacterized protein (80 aa)
•       0.937
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (185 aa)
••      0.925
infA
Translation initiation factor IF-1; No specific function has so far been attributed to this ini [...] (73 aa)
• ••  • 0.898
smpB
SsrA-binding protein; Binds specifically to the ssrA RNA (tmRNA) and is required for stable ass [...] (156 aa)
• •     0.879
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts sever [...] (164 aa)
•  •  • 0.868
AAur_2445
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By similarit [...] (256 aa)
• •     0.859
rplQ
50S ribosomal protein L17 (189 aa)
•  •    0.848
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.
Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:
additional (white) nodes         or: network depth