trmD protein (Acidovorax avenae) - STRING interaction network

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	trmD	tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (By similarity) (255 aa)
		(Acidovorax avenae)
Predicted Functional Partners:
	rimM	Ribosome maturation factor rimM; An accessory protein needed during the final step in the assem [...] (191 aa)	•		•	•	•	0.992
	rplS	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface a [...] (128 aa)	•		•	•	•	0.990
	rpsP	30S ribosomal protein S16 (85 aa)	•		•	•	•	0.971
	Aave_1582	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Converts 4-diphosphocytidyl-2-C-methyl-D [...] (165 aa)	•	•				0.919
	smpB	SsrA-binding protein; Binds specifically to the ssrA RNA (tmRNA) and is required for stable ass [...] (157 aa)	•		•			0.892
	rnhB	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By simil [...] (240 aa)	•		•			0.831
	Aave_0870	Signal recognition particle subunit FFH/SRP54 (Srp54) (459 aa)	•				•	0.821
	Aave_1407	DNA primase; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki f [...] (674 aa)	•		•			0.812
	Aave_1930	DNA polymerase I (927 aa)	•		•			0.784
	Aave_2824	Methylated-DNA--protein-cysteine methyltransferase (202 aa)	•					0.764

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Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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