trmD protein (Aeromonas salmonicida) - STRING interaction network

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	trmD	tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (By similarity) (249 aa)
		(Aeromonas salmonicida)
Predicted Functional Partners:
	rplS	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface a [...] (115 aa)	•		•	•	•	0.996
	rimM	Ribosome maturation factor rimM; An accessory protein needed during the final step in the assem [...] (173 aa)	•			•	•	0.984
	rpsP	30S ribosomal protein S16 (82 aa)	•		•	•	•	0.977
	ispF	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Converts 4-diphosphocytidyl-2-C-methyl-D [...] (158 aa)	•	•				0.920
	smpB	SsrA-binding protein; Binds specifically to the ssrA RNA (tmRNA) and is required for stable ass [...] (162 aa)	•		•			0.894
	ffh	Signal recognition particle protein (459 aa)	•				•	0.887
	priA	Primosomal protein N' (735 aa)	•		•			0.858
	pheT	Phenylalanyl-tRNA synthetase, beta subunit (799 aa)	•		•			0.833
	rnhB	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By simil [...] (196 aa)	•		•			0.814
	ligA	DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosp [...] (664 aa)	•		•			0.790

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Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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