trmD protein (Bacteroides vulgatus ATCC 8482)

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	trmD	tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (By similarity) (224 aa)
		(Bacteroides vulgatus ATCC 8482)
Predicted Functional Partners:
	rplS	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface a [...] (117 aa)	•		•	•	•	0.982
	ispF	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Converts 4-diphosphocytidyl-2-C-methyl-D [...] (160 aa)	•	•				0.922
	smpB	SsrA-binding protein; Binds specifically to the ssrA RNA (tmRNA) and is required for stable ass [...] (150 aa)	•		•			0.888
	ligA	DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosp [...] (665 aa)	•		•			0.836
	BVU_2214	Putative signal recognition protein (440 aa)	•				•	0.821
	rpsP	30S ribosomal protein S16 (183 aa)	•					0.800
	rnhB	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By simil [...] (201 aa)	•					0.795
	rpsD	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rR [...] (201 aa)	•		•	•		0.776
	rplQ	50S ribosomal protein L17 (162 aa)	•			•		0.739
	rpsM	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts sever [...] (126 aa)	•			•	•	0.739

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Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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