G7I6G1_MEDTR protein (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G7I6G1_MEDTR

GAGA-binding transcriptional activator BBR/BPC6-like protein. (340 aa)

Predicted Functional Partners:

G7KJF7_MEDTR

0.518

G7KMZ9_MEDTR

0.517

A0A072VGC8

0.514

G7IZ68_MEDTR

0.509

G7K0I9_MEDTR

0.509

G7JZ00_MEDTR

0.508

G7K7C2_MEDTR

0.506

A0A072V083

0.505

G7IC98_MEDTR

0.504

G7JMW3_MEDTR

0.501

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072V083	G7I6G1_MEDTR	A0A072V083	G7I6G1	Putative transcription factor GRAS family; Belongs to the GRAS family.	GAGA-binding transcriptional activator BBR/BPC6-like protein.	0.505
A0A072VGC8	G7I6G1_MEDTR	A0A072VGC8	G7I6G1	Putative transcription factor GRAS family; Belongs to the GRAS family.	GAGA-binding transcriptional activator BBR/BPC6-like protein.	0.514
G7I6G1_MEDTR	A0A072V083	G7I6G1	A0A072V083	GAGA-binding transcriptional activator BBR/BPC6-like protein.	Putative transcription factor GRAS family; Belongs to the GRAS family.	0.505
G7I6G1_MEDTR	A0A072VGC8	G7I6G1	A0A072VGC8	GAGA-binding transcriptional activator BBR/BPC6-like protein.	Putative transcription factor GRAS family; Belongs to the GRAS family.	0.514
G7I6G1_MEDTR	G7IC98_MEDTR	G7I6G1	G7IC98	GAGA-binding transcriptional activator BBR/BPC6-like protein.	DUF1639 family protein.	0.504
G7I6G1_MEDTR	G7IZ68_MEDTR	G7I6G1	G7IZ68	GAGA-binding transcriptional activator BBR/BPC6-like protein.	Putative leucine-rich repeat domain, L domain-containing protein.	0.509
G7I6G1_MEDTR	G7JMW3_MEDTR	G7I6G1	G7JMW3	GAGA-binding transcriptional activator BBR/BPC6-like protein.	Polygalacturonase non-catalytic protein.	0.501
G7I6G1_MEDTR	G7JZ00_MEDTR	G7I6G1	G7JZ00	GAGA-binding transcriptional activator BBR/BPC6-like protein.	Polygalacturonase non-catalytic protein.	0.508
G7I6G1_MEDTR	G7K0I9_MEDTR	G7I6G1	G7K0I9	GAGA-binding transcriptional activator BBR/BPC6-like protein.	DUF1639 family protein.	0.509
G7I6G1_MEDTR	G7K7C2_MEDTR	G7I6G1	G7K7C2	GAGA-binding transcriptional activator BBR/BPC6-like protein.	DUF1639 family protein.	0.506
G7I6G1_MEDTR	G7KJF7_MEDTR	G7I6G1	G7KJF7	GAGA-binding transcriptional activator BBR/BPC6-like protein.	DUF1639 family protein.	0.518
G7I6G1_MEDTR	G7KMZ9_MEDTR	G7I6G1	G7KMZ9	GAGA-binding transcriptional activator BBR/BPC6-like protein.	DUF1639 family protein.	0.517
G7IC98_MEDTR	G7I6G1_MEDTR	G7IC98	G7I6G1	DUF1639 family protein.	GAGA-binding transcriptional activator BBR/BPC6-like protein.	0.504
G7IC98_MEDTR	G7IZ68_MEDTR	G7IC98	G7IZ68	DUF1639 family protein.	Putative leucine-rich repeat domain, L domain-containing protein.	0.405
G7IC98_MEDTR	G7JZ00_MEDTR	G7IC98	G7JZ00	DUF1639 family protein.	Polygalacturonase non-catalytic protein.	0.416
G7IZ68_MEDTR	G7I6G1_MEDTR	G7IZ68	G7I6G1	Putative leucine-rich repeat domain, L domain-containing protein.	GAGA-binding transcriptional activator BBR/BPC6-like protein.	0.509
G7IZ68_MEDTR	G7IC98_MEDTR	G7IZ68	G7IC98	Putative leucine-rich repeat domain, L domain-containing protein.	DUF1639 family protein.	0.405
G7IZ68_MEDTR	G7JMW3_MEDTR	G7IZ68	G7JMW3	Putative leucine-rich repeat domain, L domain-containing protein.	Polygalacturonase non-catalytic protein.	0.488
G7IZ68_MEDTR	G7JZ00_MEDTR	G7IZ68	G7JZ00	Putative leucine-rich repeat domain, L domain-containing protein.	Polygalacturonase non-catalytic protein.	0.456
G7IZ68_MEDTR	G7KMZ9_MEDTR	G7IZ68	G7KMZ9	Putative leucine-rich repeat domain, L domain-containing protein.	DUF1639 family protein.	0.440