G7I378_MEDTR protein (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G7I378_MEDTR

GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily. (331 aa)

Predicted Functional Partners:

G7IZY8_MEDTR

0.535

G7KNH8_MEDTR

0.531

A2Q6E2_MEDTR

0.525

A0A072V8W0

0.521

A0A072V9X9

0.517

G7IAZ0_MEDTR

0.516

A0A072VMD0

0.428

G7I4R1_MEDTR

0.428

G7K3T4_MEDTR

0.428

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072V8W0	G7I378_MEDTR	A0A072V8W0	G7I378	Callose synthase-like protein.	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	0.521
A0A072V9X9	G7I378_MEDTR	A0A072V9X9	G7I378	Callose synthase-like protein.	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	0.517
A0A072V9X9	G7IAZ0_MEDTR	A0A072V9X9	G7IAZ0	Callose synthase-like protein.	Callose synthase-like protein.	0.516
A0A072VMD0	A2Q6E2_MEDTR	A0A072VMD0	A2Q6E2	Cryptochrome 2B apoprotein.	Putative deoxyribodipyrimidine photo-lyase.	0.918
A0A072VMD0	G7I378_MEDTR	A0A072VMD0	G7I378	Cryptochrome 2B apoprotein.	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	0.428
A0A072VMD0	G7I4R1_MEDTR	A0A072VMD0	G7I4R1	Cryptochrome 2B apoprotein.	Putative deoxyribodipyrimidine photo-lyase.	0.901
A0A072VMD0	G7IZY8_MEDTR	A0A072VMD0	G7IZY8	Cryptochrome 2B apoprotein.	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).	0.518
A2Q6E2_MEDTR	A0A072VMD0	A2Q6E2	A0A072VMD0	Putative deoxyribodipyrimidine photo-lyase.	Cryptochrome 2B apoprotein.	0.918
A2Q6E2_MEDTR	G7I378_MEDTR	A2Q6E2	G7I378	Putative deoxyribodipyrimidine photo-lyase.	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	0.525
A2Q6E2_MEDTR	G7I4R1_MEDTR	A2Q6E2	G7I4R1	Putative deoxyribodipyrimidine photo-lyase.	Putative deoxyribodipyrimidine photo-lyase.	0.918
A2Q6E2_MEDTR	G7IZY8_MEDTR	A2Q6E2	G7IZY8	Putative deoxyribodipyrimidine photo-lyase.	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).	0.618
G7I378_MEDTR	A0A072V8W0	G7I378	A0A072V8W0	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Callose synthase-like protein.	0.521
G7I378_MEDTR	A0A072V9X9	G7I378	A0A072V9X9	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Callose synthase-like protein.	0.517
G7I378_MEDTR	A0A072VMD0	G7I378	A0A072VMD0	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Cryptochrome 2B apoprotein.	0.428
G7I378_MEDTR	A2Q6E2_MEDTR	G7I378	A2Q6E2	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Putative deoxyribodipyrimidine photo-lyase.	0.525
G7I378_MEDTR	G7I4R1_MEDTR	G7I378	G7I4R1	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Putative deoxyribodipyrimidine photo-lyase.	0.428
G7I378_MEDTR	G7IAZ0_MEDTR	G7I378	G7IAZ0	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Callose synthase-like protein.	0.516
G7I378_MEDTR	G7IZY8_MEDTR	G7I378	G7IZY8	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).	0.535
G7I378_MEDTR	G7K3T4_MEDTR	G7I378	G7K3T4	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	BTB/POZ and TAZ domain protein.	0.428
G7I378_MEDTR	G7KNH8_MEDTR	G7I378	G7KNH8	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Multiprotein bridging factor 1b-like protein.	0.531

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About