A2Q1W1_MEDTR protein (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A2Q1W1_MEDTR

Putative transcription factor Trihelix family. (388 aa)

Predicted Functional Partners:

G7JZZ4_MEDTR

0.458

G7JZY9_MEDTR

0.451

G7JZZ2_MEDTR

0.447

G7LA86_MEDTR

0.446

G7JYV2_MEDTR

0.445

G7JV08_MEDTR

0.444

G7JYV4_MEDTR

0.444

G7JYU7_MEDTR

0.443

G7JZZ8_MEDTR

0.442

G7J8D6_MEDTR

0.441

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A2Q1W1_MEDTR	G7J8D6_MEDTR	A2Q1W1	G7J8D6	Putative transcription factor Trihelix family.	Uncharacterized protein.	0.441
A2Q1W1_MEDTR	G7JV08_MEDTR	A2Q1W1	G7JV08	Putative transcription factor Trihelix family.	Uncharacterized protein.	0.444
A2Q1W1_MEDTR	G7JYU7_MEDTR	A2Q1W1	G7JYU7	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.443
A2Q1W1_MEDTR	G7JYV2_MEDTR	A2Q1W1	G7JYV2	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.445
A2Q1W1_MEDTR	G7JYV4_MEDTR	A2Q1W1	G7JYV4	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.444
A2Q1W1_MEDTR	G7JZY9_MEDTR	A2Q1W1	G7JZY9	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.451
A2Q1W1_MEDTR	G7JZZ2_MEDTR	A2Q1W1	G7JZZ2	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.447
A2Q1W1_MEDTR	G7JZZ4_MEDTR	A2Q1W1	G7JZZ4	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.458
A2Q1W1_MEDTR	G7JZZ8_MEDTR	A2Q1W1	G7JZZ8	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.442
A2Q1W1_MEDTR	G7LA86_MEDTR	A2Q1W1	G7LA86	Putative transcription factor Trihelix family.	DUF241 domain protein.	0.446
G7J8D6_MEDTR	A2Q1W1_MEDTR	G7J8D6	A2Q1W1	Uncharacterized protein.	Putative transcription factor Trihelix family.	0.441
G7J8D6_MEDTR	G7JV08_MEDTR	G7J8D6	G7JV08	Uncharacterized protein.	Uncharacterized protein.	0.513
G7J8D6_MEDTR	G7JYU7_MEDTR	G7J8D6	G7JYU7	Uncharacterized protein.	DUF241 domain protein.	0.508
G7J8D6_MEDTR	G7JYV2_MEDTR	G7J8D6	G7JYV2	Uncharacterized protein.	DUF241 domain protein.	0.495
G7J8D6_MEDTR	G7JYV4_MEDTR	G7J8D6	G7JYV4	Uncharacterized protein.	DUF241 domain protein.	0.495
G7J8D6_MEDTR	G7JZY9_MEDTR	G7J8D6	G7JZY9	Uncharacterized protein.	DUF241 domain protein.	0.506
G7J8D6_MEDTR	G7JZZ2_MEDTR	G7J8D6	G7JZZ2	Uncharacterized protein.	DUF241 domain protein.	0.508
G7J8D6_MEDTR	G7JZZ4_MEDTR	G7J8D6	G7JZZ4	Uncharacterized protein.	DUF241 domain protein.	0.506
G7J8D6_MEDTR	G7JZZ8_MEDTR	G7J8D6	G7JZZ8	Uncharacterized protein.	DUF241 domain protein.	0.501
G7J8D6_MEDTR	G7LA86_MEDTR	G7J8D6	G7LA86	Uncharacterized protein.	DUF241 domain protein.	0.506