G7K3V2_MEDTR protein (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G7K3V2_MEDTR

Lateral organ boundaries (LOB) domain protein. (231 aa)

Predicted Functional Partners:

G7J4X6_MEDTR

0.558

G7LF13_MEDTR

0.539

G7JC85_MEDTR

0.530

G7L222_MEDTR

0.529

A0A072U0X7

0.528

G7L221_MEDTR

0.525

G7JAN3_MEDTR

0.522

Q2HSW8_MEDTR

0.522

G7JAN2_MEDTR

0.521

Q2HSX6_MEDTR

0.521

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072U0X7	G7J4X6_MEDTR	A0A072U0X7	G7J4X6	Uncharacterized protein.	Putative transcription factor NAM family.	0.473
A0A072U0X7	G7JAN2_MEDTR	A0A072U0X7	G7JAN2	Uncharacterized protein.	ANAC079/ANAC080/ATNAC4 protein.	0.524
A0A072U0X7	G7JAN3_MEDTR	A0A072U0X7	G7JAN3	Uncharacterized protein.	ANAC079/ANAC080/ATNAC4 protein.	0.529
A0A072U0X7	G7JC85_MEDTR	A0A072U0X7	G7JC85	Uncharacterized protein.	NAC-like transcription factor.	0.501
A0A072U0X7	G7K3V2_MEDTR	A0A072U0X7	G7K3V2	Uncharacterized protein.	Lateral organ boundaries (LOB) domain protein.	0.528
A0A072U0X7	G7L221_MEDTR	A0A072U0X7	G7L221	Uncharacterized protein.	ANAC079/ANAC080/ATNAC4 protein.	0.529
A0A072U0X7	G7L222_MEDTR	A0A072U0X7	G7L222	Uncharacterized protein.	Putative transcription factor NAM family.	0.530
A0A072U0X7	G7LF13_MEDTR	A0A072U0X7	G7LF13	Uncharacterized protein.	NAC-like transcription factor.	0.506
A0A072U0X7	Q2HSW8_MEDTR	A0A072U0X7	Q2HSW8	Uncharacterized protein.	Putative transcription factor NAM family.	0.529
A0A072U0X7	Q2HSX6_MEDTR	A0A072U0X7	Q2HSX6	Uncharacterized protein.	F-box plant-like protein.	0.532
G7J4X6_MEDTR	A0A072U0X7	G7J4X6	A0A072U0X7	Putative transcription factor NAM family.	Uncharacterized protein.	0.473
G7J4X6_MEDTR	G7K3V2_MEDTR	G7J4X6	G7K3V2	Putative transcription factor NAM family.	Lateral organ boundaries (LOB) domain protein.	0.558
G7J4X6_MEDTR	Q2HSX6_MEDTR	G7J4X6	Q2HSX6	Putative transcription factor NAM family.	F-box plant-like protein.	0.495
G7JAN2_MEDTR	A0A072U0X7	G7JAN2	A0A072U0X7	ANAC079/ANAC080/ATNAC4 protein.	Uncharacterized protein.	0.524
G7JAN2_MEDTR	G7K3V2_MEDTR	G7JAN2	G7K3V2	ANAC079/ANAC080/ATNAC4 protein.	Lateral organ boundaries (LOB) domain protein.	0.521
G7JAN2_MEDTR	Q2HSX6_MEDTR	G7JAN2	Q2HSX6	ANAC079/ANAC080/ATNAC4 protein.	F-box plant-like protein.	0.537
G7JAN3_MEDTR	A0A072U0X7	G7JAN3	A0A072U0X7	ANAC079/ANAC080/ATNAC4 protein.	Uncharacterized protein.	0.529
G7JAN3_MEDTR	G7K3V2_MEDTR	G7JAN3	G7K3V2	ANAC079/ANAC080/ATNAC4 protein.	Lateral organ boundaries (LOB) domain protein.	0.522
G7JAN3_MEDTR	Q2HSX6_MEDTR	G7JAN3	Q2HSX6	ANAC079/ANAC080/ATNAC4 protein.	F-box plant-like protein.	0.537
G7JC85_MEDTR	A0A072U0X7	G7JC85	A0A072U0X7	NAC-like transcription factor.	Uncharacterized protein.	0.501