STRINGSTRING
COG1280 COG1280 COG0583 COG0583 COG2207 COG2207 COG1846 COG1846 COG1522 COG1522 COG2814 COG2814 COG0456 COG0456 COG1309 COG1309 COG0745 COG0745 COG1028 COG1028 COG0789 COG0789
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
Score
COG1280Threonine/homoserine/homoserine lactone efflux protein    
Predicted Functional Partners:
COG0583
DNA-binding transcriptional regulator, LysR family
 
  
0.880
COG2207
AraC-type DNA-binding domain and AraC-containing proteins
 
  
0.860
COG1846
DNA-binding transcriptional regulator, MarR family
 
  
0.848
COG1522
DNA-binding transcriptional regulator, Lrp family
 
  
0.831
COG2814
Predicted arabinose efflux permease AraJ, MFS family
  
  
0.828
COG0456
Ribosomal protein S18 acetylase RimI and related acetyltransferases
 
  
0.799
COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
 
  
0.784
COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain
  
  
0.778
COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family
  
  
0.755
COG0789
DNA-binding transcriptional regulator, MerR family
 
  
0.749
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