Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| D09_orf127a | nusG | MPN_070 | MPN_067 | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | 0.741 |
| D09_orf127a | prs | MPN_070 | MPN_073 | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | Phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.775 |
| D09_orf127a | rpmG2 | MPN_070 | MPN_069 | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | Ribosomal protein L33 type2; MPN069(new); Belongs to the bacterial ribosomal protein bL33 family. | 0.741 |
| D09_orf127a | smpB | MPN_070 | MPN_074 | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.773 |
| D09_orf127a | yabC | MPN_070 | MPN_071 | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.779 |
| D09_orf127a | yabF | MPN_070 | MPN_072 | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | Nucelotidyl transferase/polynicleotide cleavage-like protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step; Belongs to the ribonuclease M5 family. | 0.773 |
| D09_orf127a | ywdF | MPN_070 | MPN_075 | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | Glycosyl Transferase; MPN075(new), 080(Himmelreich et al., 1996); Belongs to the glycosyltransferase 2 family. | 0.580 |
| deoA | yibD | MPN_064 | MPN_483 | Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. | Threonine dehydrogenase/galactosyltransferase; Processive glycosyltransferase involved in the biosynthesis of both the non-bilayer-prone beta-monoglycosyldiacylglycerol and the bilayer-forming membrane lipid glucosyl-galactosyldiacylglycerol and digalactosyl-diacylglycerol. These components contribute to regulate the properties and stability of the membrane. Catalyzes sequentially the transfers of glucosyl or galactosyl residues from UDP-Glc or UDP- Gal to diacylglycerol (DAG) acceptor to form the corresponding beta- glycosyl-DAG (3-O-(beta-D-glycopyranosyl)-1,2-diacyl-sn-glycerol). Th [...] | 0.627 |
| deoA | ywdF | MPN_064 | MPN_075 | Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. | Glycosyl Transferase; MPN075(new), 080(Himmelreich et al., 1996); Belongs to the glycosyltransferase 2 family. | 0.627 |
| galE | yibD | MPN_257 | MPN_483 | UDP-glucose 4-epimerase; Involved in the metabolism of galactose. Catalyzes the conversion of UDP-galactose (UDP-Gal) to UDP-glucose (UDP-Glc) through a mechanism involving the transient reduction of NAD (By similarity). | Threonine dehydrogenase/galactosyltransferase; Processive glycosyltransferase involved in the biosynthesis of both the non-bilayer-prone beta-monoglycosyldiacylglycerol and the bilayer-forming membrane lipid glucosyl-galactosyldiacylglycerol and digalactosyl-diacylglycerol. These components contribute to regulate the properties and stability of the membrane. Catalyzes sequentially the transfers of glucosyl or galactosyl residues from UDP-Glc or UDP- Gal to diacylglycerol (DAG) acceptor to form the corresponding beta- glycosyl-DAG (3-O-(beta-D-glycopyranosyl)-1,2-diacyl-sn-glycerol). Th [...] | 0.648 |
| galE | ywdF | MPN_257 | MPN_075 | UDP-glucose 4-epimerase; Involved in the metabolism of galactose. Catalyzes the conversion of UDP-galactose (UDP-Gal) to UDP-glucose (UDP-Glc) through a mechanism involving the transient reduction of NAD (By similarity). | Glycosyl Transferase; MPN075(new), 080(Himmelreich et al., 1996); Belongs to the glycosyltransferase 2 family. | 0.645 |
| nusG | D09_orf127a | MPN_067 | MPN_070 | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | 0.741 |
| nusG | prs | MPN_067 | MPN_073 | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | Phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.852 |
| nusG | rpmG2 | MPN_067 | MPN_069 | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | Ribosomal protein L33 type2; MPN069(new); Belongs to the bacterial ribosomal protein bL33 family. | 0.932 |
| nusG | smpB | MPN_067 | MPN_074 | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.783 |
| nusG | yabC | MPN_067 | MPN_071 | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.765 |
| nusG | yabF | MPN_067 | MPN_072 | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | Nucelotidyl transferase/polynicleotide cleavage-like protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step; Belongs to the ribonuclease M5 family. | 0.787 |
| nusG | ywdF | MPN_067 | MPN_075 | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | Glycosyl Transferase; MPN075(new), 080(Himmelreich et al., 1996); Belongs to the glycosyltransferase 2 family. | 0.564 |
| prs | D09_orf127a | MPN_073 | MPN_070 | Phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | Unknown; MPN070(new), 085(Himmelreich et al., 1996). | 0.775 |
| prs | nusG | MPN_073 | MPN_067 | Phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | Transcription antitermination factor; Participates in transcription elongation, termination and antitermination. | 0.852 |
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