STRINGSTRING
tef3 tef3 SPAC29A4.02c SPAC29A4.02c elf1 elf1 rps902 rps902 rpl502 rpl502 rps13 rps13 rps901 rps901 imp3 imp3 nam9 nam9 rps3 rps3 rps2 rps2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tef3Elongation factor 3; The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl- tRNA to the ribosome. (1047 aa)    
Predicted Functional Partners:
SPAC29A4.02c
Elongation factor 1-gamma; Probably plays a role in anchoring the complex to other cellular components.
   
 
 0.998
elf1
mRNA export factor elf1; Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily.
  
 
0.997
rps902
40S ribosomal protein S9-B; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.996
rpl502
60S ribosomal protein L5-B; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throug [...]
   
 
 0.996
rps13
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.996
rps901
40S ribosomal protein S9-A; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.996
imp3
U3 small nucleolar ribonucleoprotein protein imp3; Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing (By similarity).
   
 
 0.995
nam9
37S ribosomal protein S4-like, mitochondrial.
   
 
 0.995
rps3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.995
rps2
40S ribosomal protein S2.
   
 
 0.995
Your Current Organism:
Schizosaccharomyces pombe
NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-
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