STRINGSTRING
dat dat rocA1 rocA1 hisC_2 hisC_2 aspC aspC APW63497.1 APW63497.1 dadA1 dadA1 cimA cimA leuA leuA ilvD_1 ilvD_1 ilvD_2 ilvD_2 pheA pheA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
datD-alanine aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P99090. (300 aa)    
Predicted Functional Partners:
rocA1
Hypothetical protein; Ab initio prediction:Prodigal:2.6; Belongs to the aldehyde dehydrogenase family.
  
 0.928
hisC_2
Histidinol-phosphate aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q39YP6; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.921
aspC
Aspartate aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q56232.
  
 
 0.907
APW63497.1
Aspartate aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23034.
  
 
 0.907
dadA1
D-amino acid dehydrogenase 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9HTQ0.
     
 0.904
cimA
(R)-citramalate synthase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q74C76; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.756
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
  
 
 0.756
ilvD_1
Dihydroxy-acid dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P05791; Belongs to the IlvD/Edd family.
  
 
 0.651
ilvD_2
Dihydroxy-acid dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WKJ5; Belongs to the IlvD/Edd family.
  
 
 0.651
pheA
P-protein; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A9J8.
  
  
 0.524
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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